Tartu Nature House Supervisory Board has 8 members:
- Estonian University of Life Sciences representative
- Tartu City representatives;
- Tartu Veevärk AS water utility company representative;
- Representatives for NGOs: Estonian Fund for Nature, Estonian Ornithological Society, Tartu Student Nature Protection Circle, Estonian Green Movement, Peipsi Centre for Transboundary Cooperation
Based on the foundation articles, the board organises management and exercises supervision of the administration and operation.